The issue is that You have the
wrong controller for an MCOR.
You have a "51-42L500NN
0S" which is a
0-5kΩ throttle, but You should have a "51-42L500NN
VS" which is a 3 wire
0-5v setup.
The resistance of the potentiometer is not too important on a 0-5v setup as it is on a pure resistance or rheostat mode.
If You cannot exchange the controller for the right type, You can make some modifications to the throttle signal to get it to work better.
I also assume You must have removed (or will need to) the micro switch #3 for half-speed reverse as it would not be compatible with your controller.
This should be the original wiring diagram for your cart:
http://www.buggiesgonewild.com/attac..._with_mcor.jpg
Can You verify which MCOR wires you have plugged to
Controller #2 and #3 Terminals?